[FCA] Trachea (10x, Stringent) ASAP58 v5

26,906 cells D. melanogaster

Parsing

Success
2021-06-11 14:12 Wait 0:09 Run 0:46 (expected 1:20) Max. RAM 2.13TB (expected 2.75GB)
Parameters
Results (stored in parsing/output.loom )
cells Metadata
/col_attrs/Clustering_Leiden_resolution_8.0 1 cell 109 categories /col_attrs/Clustering_Leiden_resolution_0.6__18_ 1 cell 31 categories /col_attrs/Clustering_Broad_Annotation_Extrapolated 1 cell 16 categories /col_attrs/Clustering_Leiden_resolution_0.4__default__380_ 1 cell 29 categories /col_attrs/Clustering_Leiden_resolution_2.0 1 cell 45 categories /col_attrs/Clustering_Leiden_resolution_1.6 1 cell 40 categories /col_attrs/Clustering_Leiden_resolution_6.0 1 cell 86 categories /col_attrs/scrublet__doublet_scores 1 cell 257 categories /col_attrs/Clustering_Leiden_resolution_1.8__2_ 1 cell 42 categories /col_attrs/Clustering_Leiden_resolution_10.0 1 cell 127 categories /col_attrs/Clustering_Leiden_resolution_4.0 1 cell 69 categories /col_attrs/Clustering_Leiden_resolution_1.2 1 cell 36 categories /col_attrs/Clustering_Annotation__Relaxed_ 1 cell 12 categories /col_attrs/annotation_broad_extrapolated__ontology_id 1 cell 16 categories /col_attrs/R_annotation 1 cell 12 categories /col_attrs/annotation_broad_extrapolated 1 cell 16 categories /col_attrs/annotation_broad 1 cell 8 categories /col_attrs/CellID 26906 cells 1 row /col_attrs/_StableID 26906 cells 1 row /col_attrs/n_counts 26906 cells 1 row /col_attrs/Embedding_HVG_PC1_PC2 26906 cells 2 rows /col_attrs/id 1 cell 2 categories /col_attrs/tissue 1 cell 1 category /col_attrs/percent_mito 26906 cells 1 row /col_attrs/leiden 1 cell 29 categories /col_attrs/Clustering_Leiden_resolution_1.0 1 cell 33 categories /col_attrs/Clustering_Annotation 1 cell 11 categories /col_attrs/Clustering_Leiden_resolution_0.8 1 cell 31 categories /col_attrs/R_annotation_broad__ontology_id 1 cell 8 categories /col_attrs/_Depth 26906 cells 1 row /col_attrs/_Detected_Genes 26906 cells 1 row /col_attrs/_Protein_Coding_Content 26906 cells 1 row /col_attrs/_Mitochondrial_Content 26906 cells 1 row /col_attrs/_Ribosomal_Content 26906 cells 1 row /col_attrs/annotation_broad__ontology_id 1 cell 8 categories /col_attrs/fca_id 1 cell 2 categories /col_attrs/dissection_lab 1 cell 1 category /col_attrs/Embedding_HVG_t_SNE 26906 cells 2 rows /col_attrs/Barcode 26906 cells 1 row /col_attrs/celda_decontx__doublemad_predicted_outliers 1 cell 2 categories /col_attrs/scrublet__predicted_doublets_based_on_10x_chromium_spec 1 cell 1 category /col_attrs/age 1 cell 1 category /col_attrs/scrublet__predicted_doublets 1 cell 1 category /col_attrs/Embedding_HVG_UMAP 26906 cells 2 rows /col_attrs/log_n_genes 26906 cells 1 row /col_attrs/Embedding_SCENIC_AUC_UMAP 26906 cells 2 rows /col_attrs/celda_decontx__clusters 1 cell 17 categories /col_attrs/sex 1 cell 2 categories /col_attrs/R_annotation__ontology_id 1 cell 7 categories /col_attrs/Embedding_SCENIC_AUC_t_SNE 26906 cells 2 rows /col_attrs/celda_decontx__contamination 26906 cells 1 row /col_attrs/R_annotation_broad 1 cell 9 categories /col_attrs/Clustering_Broad_Annotation__Relaxed_ 1 cell 9 categories /col_attrs/batch_id 1 cell 1 category /col_attrs/Clustering_Broad_Annotation 1 cell 8 categories /col_attrs/n_genes 26906 cells 1 row /col_attrs/log_n_counts 26906 cells 1 row /col_attrs/fly_genetics 1 cell 1 category /col_attrs/batch 1 cell 2 categories /col_attrs/note 1 cell 1 category /col_attrs/Clustering_Leiden_resolution_1.4 1 cell 37 categories /col_attrs/annotation 1 cell 11 categories /col_attrs/sample_id 1 cell 2 categories /col_attrs/annotation__ontology_id 1 cell 7 categories /col_attrs/ClusterID 1 cell 29 categories
Global Metadata